2024
54 – Dielectric properties of water inside charged nanoslits: a comparison of rigid and fexible three site models. R. Fuentes-Azcatl, J. R. Bordin and M. C. Barbosa. Submitted. (2024).
53 – Soft colloids under strong confinement. L. B. Krott, T. P. O. Nogueira and J. R. Bordin. Submitted. (2024).
52 – Quantum Simulations and Experimental Insights into Glyphosate Adsorption Using Graphene-Based Nanomaterials. W. S. Araújo, C. R. C. Rêgo, D. Guedes-Sobrinho, A. C. Dias, I. R. do Couto, J. R. Bordin, C. F. de Matos, and M. J. Piotrowski. Submitted. (2024).
51 – O pacote LAMMPS como uma ferramenta para o ensino de transição de fases (The LAMMPS package as a tool for teaching phase transitions). T. P. O. Nogueira, M. M. Sodré and J. R. Bordin. Submitted. (2024).
50 – TrajPy: empowering feature engineering for trajectory analysis across all domains. M. Moreira-Soares, E. Mossmann, R. D. M. Travasso and J. R. Bordin. Bioinformatics Advances 4, vbae026 (2024).
2023
49 – The ECM and tissue architecture are major determinants of early invasion mediated by E-cadherin dysfunction. S. Melo, P. Guerrero, M. Moreira-Soares, J. R. Bordin, F. Carneiro, P. Carneiro, M. B. Dias, J. Carvalho, J. Figueiredo, R. Seruca and R. D. M. Travasso. Communications Biology 6, 1131 (2023).
48- Evidence of caged to normal diffusion transition in benzene along supercritical isobars: insights from molecular dynamics simulations. W. S. Oliveira, E. E. de Moraes, T. P. O. Nogueira, D. A. Sales and J. R. Bordin. The Journal of Supercritical Fluids 203, 106094 (2023).
47 – A DPD model of soft spheres with waterlike anomalies and poly(a)morphism. J. R. Bordin. Soft Matter 19, 7613-7624 (2023).
46 – Stripes polymorphism and water-like anomaly in hard core-soft corona dumbbells. T. P. O. Nogueira and J. R. Bordin. Journal of Molecular Liquids 390, 123127. (2023).
45 – Molecular Modeling of Aquaporins and Artificial Transmembrane Channels: a mini-review and perspective for plants. J. R. Bordin, A. V. Ilha, P. R. B. Côrtes, W. S. Oliveira, L. A. Pinheiro, E. E. de Moraes, T. G. Grison and M. H. Köhler. Accepted in Theoretical and Experimental Plant Physiology. Special Issue in Advances in Philosophical and Theoretical Plant Biology (2023).
44 – How dimensionality affects the structural anomaly in a core-softened colloid. L. B. Krott and J. R. Bordin . Colloids & Interfaces 7, 33 (2023).
43 – Solid-amorphous transition is related to the waterlike anomalies in a fluid without liquid-liquid phase transition. J. R. Bordin and L. B. Krott. The Journal of Chemical Physics 158, 134501 (2023). Editor’s Pick and 2023 JCP Emerging Investigators Special Collection.
42 – Combining multi-scale simulations and experiments to unveil the adsorption of blue methylene in graphene tridimensional based materials. M. B. Leão, L F. O. Vendrame, S. B. Fagan, I. Z. da Silva, I. M. Jauris J. R. Bordin and C. F. de Matos. Molecular Systems Design and Engineering 8, 666 (2023).
41 – Specific surface area versus adsorptive capacity: an application view of 3D graphene-based materials for the removal of emerging water pollutants. M. B. Leão, J. R. Bordin and C. F. de Matos. Water, Air, & Soil Pollution 236, 136. (2023).
2022
40 – 2D Patterns in core-softened systems: from sphere to dumbbell colloids. T. P. O. Nogueira and J. R. Bordin. Physica A, 605, 128048 (2022).
39 – Relativistic Dilation and Contraction of the Probabilities of Quantum States of Light at Angular Incidence. D. S. Cardoso and J. R. Bordin. Optik, 267, 169712 (2022).
38 – Classical-Relativistic variability of the inertia of photon displacement mass in the matter and the specific vacuum. D. S. Cardoso and J. R. Bordin. Optik, 260, 169081 (2022).
37 – Phase classification using neural networks: application to supercooled polymorphic core-softened mixtures. V. F. Hernandes, M. S. Marques and J. R. Bordin. Journal of Physics: Condensed Matter, 34, 024002 (2022). Special Issue: Soft Matter in Latin America.
2021
36 – Structure and dynamics of nanoconfined water and aqueous solutions. H. R. Corti, G. Appignanesi, M. Barbosa, J. R. Bordin, C. Calero, G. Camisasca, M. D. Elola, G. Franzese, P. Gallo, A. Hassanali, K. Huang, D. Laria, C. Menéndez, J. M. de Oca, M. P. Longinotti, J. Rodriguez, M. Rovere, D. Scherlis and I. Szleifer. The European Physical Journal E 44, 136 (2021).
35 – Hard core-soft shell particles near repulsive interfaces: interplay between adsorption, aggregation and diffusion. M. S. Marques and J. R. Bordin. Journal of Colloid and Interface Science Open, 4, 100029 (2021).
34 – Core-softened water-alcohol mixtures: the solute-size effects. M. S. Marques, V. F. Hernandes and J. R. Bordin. Physical Chemistry Chemical Physics, 23, 16213-16223 (2021).
33 – Structural behavior of a two length scale core-softened fluid in two dimensions. D. S. Cardoso, V. F. Hernandes, T. P. O. Nogueira and J. R. Bordin. Physica A, 566, 125628 (2021).
2020
32- Competing interactions near the liquid-liquid phase transition of core-softened water/methanol mixtures. M. S. Marques, V. F. Hernandes, E. Lomba and J. R. Bordin. Journal of Molecular Liquids, 320, 114420 (2020).
31 – Tracer diffusion in crowded solutions of sticky polymers. T. P. O. Nogueira, H. O. Frota, F. Piazza and J. R. Bordin. Physical Review E 102, 032618 (2020).
30 – A description of the formation and growth processes of CaTiO3 mesocrystals: A joint experimental and theoretical approach. M. L. Moreira, J. R. Bordin, J. M. Andrés, J. A. Varela and E. Longo. Molecular Systems Desing & Engineering, 5, 1255 – 1266 (2020).
29 – Salt parameterization can drastically affect the results from classical atomistic simulations of water desalination by MoS2 nanopores. J. P. K. Abal, J. R. Bordin and M. C. Barbosa. Physical Chemistry Chemical Physics 22, 11053-11061 (2020).
*Correction: Salt parameterization can drastically affect the results from classical atomistic simulations of water desalination by MoS2 nanopores. J. P. K. Abal, J. R. Bordin and M. C. Barbosa. Physical Chemistry Chemical Physics, 22, (2020).
28 – Adhesion modulates cell morphology and migration within dense fibrous networks. M. Moreira-Soares, Susana Pinto-Cunha, J. R. Bordin and R. D. M. Travasso. Journal of Physics: Condensed Matter, 32, 314001 (2020). Cover Page and Special Issue on Droplets and Vesicles.
27 – Waterlike anomalies in hard core-soft shell nanoparticles using a effective potential approach: pinned vs adsorbed polymers. M. S. Marques, T. P. O. Nogueira, R. F. Dillenburg, M. C. Barbosa and J. R. Bordin. Journal of Applied Physics 127, 054701 (2020). Special Collection: Polymer-Grafted Nanoparticles.
2019
26 – Distinct self-assembly aggregation patterns of nanorods with decorated ends: a simple model study. J. R. Bordin. Fluid Phase Equilibria 499, 112251 (2019).
25 – Water in nanotubes: the surface effect. M. H. Köhler, J. R. Bordin, C. F. de Matos and M. C. Barbosa. Chemical Engineering Science 203, 54-67. (2019).
24 – CO2 and SO2 pressure-driven adsorption by 3D graphene nanoslits: a molecular dynamics study. A. C. Borges, M. H. Köhler, and J. R. Bordin. Journal of Nanomaterials, 2019, Article ID 9594816. (2019).
23 – Ion Flocculation in Water: From Bulk to Nanoporous Membrane Desalination. M. H. Köhler, J. R. Bordin and M. C. Barbosa. Jounal of Molecular Liquids 277, 516-521 (2019).
2018
22 – Surface, density and temperature effects on the water diffusion and structure inside narrow nanotubes. M. H. Köhler and J. R. Bordin. The Journal of Physical Chemistry C 122, 6684–6690 (2018).
21 – 2D nanoporous membrane for cation removal from water: effects of ionic valence, membrane hydrophobicity and pore size. M. H. Köhler, J. R. Bordin and M. C. Barbosa. The Journal of Chemical Physics 148, 222804 (2018).
20 – Waterlike anomalies in a 2D core-softened potential. J. R. Bordin and M. C. Barbosa. Physical Review E 97, 022604 (2018).
19 – Distinct aggregation patterns and fluid porous phase in a 2D model for colloids with competitive interactions. J. R. Bordin. Physica A, 495, 215-224 (2018).
18 – Structure and dynamics of water inside hydrophobic and hydrophilic nanotubes. M. H. Köhler, J. R. Bordin, L. B. da Silva and M. C. Barbosa. Physica A 490, 331-337 (2018).
2017
17 – Breakdown of the Stokes-Einstein water transport through narrow hydrophobic nanotubes. M. H. Köhler, J. R. Bordin, L. B. da Silva and M. C. Barbosa. Physical Chemistry Chemical Physics 19, 12921-12927 (2017).
16 – How Competitive Interactions Affect the Self-Assembly of Confined Janus Nanoparticles. J. R. Bordin and L. B. Krott. The Journal of Physical Chemistry B 121, 4308–4317 (2017).
15 – Flow and structure of fluids in functionalized nanopores. J. R. Bordin and M. C. Barbosa. Physica A 467, 137-147 (2017).
2016
14 – Anomalous diffusion and diffusion anomaly in confined Janus dumbbells. L. B. Krott, C. Gavazonni and J. R. Bordin. The Journal of Chemical Physics 145, 244906 (2016).
13 – Confinement effects on the properties of Janus dimers. J. R. Bordin and L. B. Krott. Physical Chemistry Chemical Physics 18, 28740-28746 (2016).
12 – Static polarizability effects on counterion distributions near charged surfaces: a coarse-grained Molecular Dynamics study employing the Drude model. J. R. Bordin, R. Podgornik and C. Holm. European Physical Journal Special Topics. 225, 1693-1705 (2016).
11 – Waterlike Features, Liquid-Crystal Phase and Self-Assembly in Janus Dumbbells. J. R. Bordin. Physica A, 459, 1-8. (2016).
2015
10 – Self-assembly and Waterlike Anomalies in Janus Nanoparticles. J. R. Bordin, L. B. Krott and M. C. Barbosa. Langmuir, 31, 8577-8582. (2015).
9 – Effects of confinement on anomalies and phase transitions of core-softened fluids. L. B. Krott, J. R. Bordin, N. M. Barraz Jr and M. C. Barbosa. The Journal of Chemical Physics, 142, 134502 (2015).
8 – New structural anomaly induced by nanoconfinement. L. B. Krott, J. R. Bordin and M. C. Barbosa. The Journal of Physical Chemistry B, 119, 291-300 (2015).
2014
7 – High pressure induced phase transition and superdiffusion in anomalous fluid confined in flexible nanopores. J. R. Bordin, L. B. Krott and M. C. Barbosa. The Journal of Chemical Physics 141, 144502 (2014).
6 – Enhanced flow of core-softened fluids through narrow nanotubes. J. R. Bordin, J. S. Soares Jr., A. Diehl and M. C. Barbosa. The Journal of Chemical Physics 140, 194504 (2014).
5 – Surface Phase Transition in Anomalous Fluid in Nanoconfinement. J. R. Bordin, L. B. Krott and M. C. Barbosa. The Journal of Physical Chemistry C. 118, 9497–9506 (2014).
2013
4 – Distinct dynamical and structural properties of a core-softened fluid when confined between fluctuating and fixed walls. L. B. Krott and J. R. Bordin.The Journal of Chemical Physics 139, 154502 (2013).
3 – Relation between flow enhancement factor and structure for core-softened fluids inside nanotubes. J. R. Bordin, A. Diehl and Marcia C. Barbosa. The Journal of Physical Chemistry B, 117, 7047-7056 (2013).
2012
2 – Diffusion Enhancement in Core-softened fluid confined in nanotubes. J. R. Bordin, A. B. de Oliveira, A. Diehl and Marcia C. Barbosa. The Journal of Chemical Physics 137,084504 (2012).
1 – Ion fluxes through nanopores and transmembrane channels. J. R. Bordin, A. Diehl, M. C. Barbosa, and Y. Levin. Physical Review E 85, 031914 (2012).